portal_client

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Unable to download some files in HMP

4

Hi, I was trying to download data from HMP data portal. However, I observed that for some files I am able to download the file using the download button given...

diyabasu97

Error using manifest file, error message: Skipping file ID <file_id> as none of the URLs ['FASP'] succeeded.

8

Hi, I am executing the portal_client tool (with my iHMP username and password) to download the files using a manifest file as follows: portal_client -m hmp_cart_e0473170e2.tsv --endpoint-priority FASP --user username...

Yingcui2018

Getting error while trying to download from HMP

1

Hi @victor73, I was trying to install the portal client using docker and I was successfully able to do it. However, when I was trying to run the following command,...

diyabasu97

no valid URL in the manifest file

1

Hi there, trying to download these datafiles: https://assets.nemoarchive.org/dat-zkgd0it I add files to my cart, download the manifest file, installed portal_client but get the error "no valid URL in the manifest...

eggomez

Not all biological observation matrix are downloaded

2

Hi all, First, I tried alot to download the biological observation matrix and this error always appear: Not all files (total of 2308) were downloaded successfully. Number of failures: 0...

ManarRashad

Error during manifest download from HMP: "Skipping file ID "fileID" as none of the URLs [HTTPS'] succeeded"

1

The manifest has valid URLs but I get this message during download with portal_client. If I go to the HMP cart and click on the same URLs for any of...

nano1231

This would make it easy to install this software to new users. (xpost to [this user](https://forum.qiime2.org/t/importing-metadata-from-integrative-human-microbiome-project-ihmp-publicly-available-data/14174/23) installing portal_client for the first time)

colinbrislawn

Hi, I'm posting this issue as I found in the history other related issues that didn't seem to be completely solved yet. In my case the issue centered around the...

rpelicae

No Valid URL, Request to Appears to Timeout

1

It appears that the servers are down, I can't download any files using the manifest: No valid URL found in the manifest for file ID ac37ecc9-2dca-4698-bf7e-1dbaccc903ac 2020-05-05 23:18:57,603 - manifest_processor.ManifestProcessor...

jwill490

Restitute path hierarchy from manifest URLs

1

When downloading from a large manifest, all files are dumped in the same directory with no control beyond `--destination`. When multiple studies and body-sites are included, if would help if...

alicedb2