myria3d
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Laspy missing from environment.yml ?
Steps to reproduce :
- Build docker image from source (
docker build . -t myria3d) - Run an inference job using the created docker image. The following stack trace shows up and the inference fails. Looks like ign-pdal-tools does not install laspy directly.
Traceback (most recent call last):
File "/app/run.py", line 125, in <module>
launch_predict()
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/hydra/main.py", line 48, in decorated_main
_run_hydra(
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/hydra/_internal/utils.py", line 377, in _run_hydra
run_and_report(
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/hydra/_internal/utils.py", line 214, in run_and_report
raise ex
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/hydra/_internal/utils.py", line 211, in run_and_report
return func()
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/hydra/_internal/utils.py", line 378, in <lambda>
lambda: hydra.run(
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/hydra/_internal/hydra.py", line 111, in run
_ = ret.return_value
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/hydra/core/utils.py", line 233, in return_value
raise self._return_value
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/hydra/core/utils.py", line 160, in run_job
ret.return_value = task_function(task_cfg)
File "/app/run.py", line 65, in launch_predict
from myria3d.predict import predict
File "/app/myria3d/predict.py", line 14, in <module>
from myria3d.models.interpolation import Interpolator # noqa
File "/app/myria3d/models/interpolation.py", line 11, in <module>
from pdaltools import las_info
File "/opt/conda/envs/myria3d/lib/python3.9/site-packages/pdaltools/las_info.py", line 7, in <module>
import laspy
ModuleNotFoundError: No module named 'laspy'
Temporary solution
If I manually add laspy in the pip section of the environment.yml file and rebuild the docker image, then the inference is working fine.
- pip:
- hydra-core==1.1.*
- hydra-colorlog==1.1.*
# --------- Documentation --------- #
- myst_parser==0.17.*
- sphinxnotes-mock==1.0.0b0 # still a beta
- sphinx_paramlinks==0.5.*
- ign-pdal-tools>=1.5.2
- laspy
I probably should use laspy[lazrs] after having a look at ign-pdal-tools sources.