ChemFlow
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Antechamber cannot be run in parallel in the same folder.
I just realized that antechamber can not be executed at the concurrently at the same folder.
For each ligand it generates a number of temporary files with the same name
Quick solution could be running from a temporary folder, example here: dbarreto@hpc-login1:~/ChemFlow_paper/Benchmark_meso$ vim LigFlow_names.bash
cd $(mktemp -d ) ; antechamber -i ${RUNDIR}/${LIGAND}.mol2 ...