dsurqec_40micron_mask orientation

[araikes]

Hi @TheChymera ,

Have you noticed that the 40 micron DSURQE template and its associated mask have different affines? I have the current version of the templates (v 0.6.0). It looks like the resetting the s-form didn't work because I can run those two lines of code manually and it corrects the orientation.

[adamraikes@r3u08n1 mouse-brain-templates]$ $SIF mrinfo dsurqec_40micron.nii 
************************************************
Image name:          "dsurqec_40micron.nii"
************************************************
  Dimensions:        315 x 478 x 241
  Voxel size:        0.04 x 0.04 x 0.04
  Data strides:      [ 1 2 3 ]
  Format:            NIfTI-1.1
  Data type:         32 bit float (little endian)
  Intensity scaling: offset = 0, multiplier = 1
  Transform:                    1           0           0       -6.27
                                0           1           0       -8.19
                                0           0           1        -4.2
  comments:          mnc2nii ex-vivo/DSURQE_40micron_average.mnc nifti/DSURQE_40micron_average.nii

[adamraikes@r3u08n1 mouse-brain-templates]$ $SIF mrinfo dsurqec_40micron_mask.nii 
************************************************
Image name:          "dsurqec_40micron_mask.nii"
************************************************
  Dimensions:        241 x 478 x 315
  Voxel size:        0.04 x 0.04 x 0.04
  Data strides:      [ 3 2 1 ]
  Format:            NIfTI-1.1
  Data type:         32 bit float (little endian)
  Intensity scaling: offset = 0, multiplier = 1
  Transform:                    1           0           0        -4.2
                                0           1           0       -8.19
                                0           0           1       -6.27
  comments:          mnc2nii ex-vivo/DSURQE_40micron_mask.mnc nifti/DSURQE_40micron_mask.nii