Irfan Alibay

As discussed in #36 we should just try a quick PR to see if we can just do >3.3 since I _think_ we fixed this upstream.

Mostly for the benefit of @orbeckst @ianmkenney and I had a chat yesterday and it looks the way errors are generated for things like #10 has changed a lot since...

@wenchangzhou-qtx, CLI YAML inputs for Protocols is not currently available in the 1.0 release of openfe. It should make it soon but for now if you want non-default settings you'll...

This issue blocks https://github.com/OpenFreeEnergy/ExampleNotebooks/pull/117

Re-opening: whilst the docs were dealt with, the atommapping CLI entry point still exists - if we don't want it then we should remove it.

We have a potential fix for this by optionally enforcing the robust solver, but it needs testing on a larger set of production simulations which unfortunately we've not had time...

## Overview of issue * macos-13 (x86_64) is not compatible with the current conda-forge deployments of AT22 or AT23. The wheels will get picked up and installed, but SQM will...

This has either been addressed or moved to other issues. The lack of compatibility between AT and macos-13 is an issue that will need a look at.

@mikemhenry the issue isn't so much that it doesn't resolve but that there's an issue with the binary - i.e. if you run SQM it'll fail horribly.

@mikemhenry I think you set this up initially, can you have a look if this makes sense?