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Published 20 hours ago • verified publisher icon IARCbioinfo

Re-evaluate SAM/BAM processing tools

Open mfoll opened this issue 6 years ago • 1 comments

Check which tools among samblaster sambamba biobambam samtools elPrep etc. is the most efficient as things might have changed a bit in the last years. See this paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504710/

mfoll avatar Dec 21 '18 11:12 mfoll

https://github.com/ssadedin/bazam seems a good option for BAM -> FASTQ

mfoll avatar Apr 23 '20 15:04 mfoll