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Published 20 hours ago • verified publisher icon Hoohm

Allow to split fastq or get list of readID per cell

Open lldelisle opened this issue 7 months ago • 2 comments

Hi, This may look like a very strange query. I am trying to make a small dataset and I would be interested in generating a small fastq with only reads mapping to some cells. I was wondering if you've already written a piece of code that would store readID instead of the count. Thanks.

lldelisle avatar Nov 14 '23 11:11 lldelisle

I will write the code as I need it. Would you like a PR?

lldelisle avatar Nov 16 '23 11:11 lldelisle

Hello,

I have not written code that would accommodate this atm. If you want to have a stab at it, I would recommend trying out the new branch using polars as a backend as it will make this way easier Here is the PR: https://github.com/Hoohm/CITE-seq-Count/pull/170

Hoohm avatar Nov 16 '23 11:11 Hoohm