CITE-seq-Count
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barcode bug
Hi, I have 2 issues, one is when setting the estimated cell number, CITE-seq-Count appears to force the cell count to that number. I am worried this can lead to inaccurate/biased results. For example, if I set cell number to 8000, I get 8000 +/- 10 cells back, if I set the same dataset to 10,000, I get ~10,000 back. To try to avoid this, I tried to set the cell barcode mismatch to 0 and then got the following error.
Correcting cell barcodes
Looking for a whitelist
Collapsing cell barcodes
Traceback (most recent call last):
File "/home/martensc/.local/bin/CITE-seq-Count", line 11, in
All I did was to add the following to my command, which works fine otherwise: --bc_collapsing_dist 0 Thanks, Craig
Hello @craigamartens,
Thank you for pointing it out, I'll add it to my long list of fixes for 1.5.0 :)