Can't Open Connection

[avrajit]

I used full path for the directory as below but there is problem of reading the files /media/hp/DATa/tools/DriverML-master/run.driverml.sh -w /media/hp/DATa/tools/DriverML-master -i /media/hp/DATa/Pancreatic/WGS/Somatic_pairedSample/MAF_Somatic/driverInput.maf -f /media/hp/DATa/Ref/GRCh38.p14.genome.fa -r /media/hp/DATa/Ref/GRCh38.p14.genome.fa -o /media/hp/DATa/Pancreatic/WGS/Somatic_pairedSample/DriverMutation/SomaticDriver

The errors are Can't open 'gene-characteristic-unix.txt' for reading: 'No such file or directory' at /media/hp/DATa/tools/DriverML-master/add-genes-to-characteristic.pl line 15 Can't open 'gene-characteristic-unix.txt' for reading: 'No such file or directory' at /media/hp/DATa/tools/DriverML-master/add-genes-to-characteristic.pl line 15 Final cluster number is 1 Error in file(file, "rt") : cannot open the connection Calls: read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '10_17_11_38_20_340645478_gene-characteristic.tmp': No such file or directory Execution halted Can't open '10_17_11_38_20_340645478_gene-class.tmp' for reading: 'No such file or directory' at /media/hp/DATa/tools/DriverML-master/pre-drgap.pl line 16 Error in file(file, "rt") : cannot open the connection Calls: read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file 'pre_10_17_11_38_20_340645478_gene-characteristic.tmp': No such file or directory Execution halted Can't open 'pre_10_17_11_38_20_340645478_gene-class.tmp' for reading: 'No such file or directory' at /media/hp/DATa/tools/DriverML-master/pre-drgap.pl line 16 The file you sepcified does not exist at /media/hp/DATa/tools/DriverML-master/reduction.pl line 43. The file you sepcified does not exist at /media/hp/DATa/tools/DriverML-master/reduction.pl line 43. used (Mb) gc trigger (Mb) max used (Mb) Ncells 294435 15.8 692242 37 478378 25.6 Vcells 510708 3.9 8388608 64 1923835 14.7 Error in file(file, "rt") : cannot open the connection Calls: read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file 'pre_10_17_11_38_20_340645478_subclass-1.tmp_exp.tmp': No such file or directory Execution halted There was an error opening the eta file. Error in file(file, "rt") : cannot open the connection Calls: read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file '10_17_11_38_20_340645478_out_file_1.tmp': No such file or directory Execution halted 10_17_11_38_20_340645478