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Published 20 hours ago • verified publisher icon Hatchin
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FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data

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Reassigning FlowSOM package

Dear @Hatchin , We (original authors of the FlowSOM package) have recently translated the FlowSOM package to R ourselves, including similar options for visualisation as available in R. As your...

SofieVG avatar SofieVG

AttributeError: 'DataFrame' object has no attribute 'as_matrix'

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As Pandas has been updated to v1.0, I think `as_matrix` should be replaced by `.values()`. See https://pandas.pydata.org/pandas-docs/version/0.23.4/generated/pandas.DataFrame.as_matrix.html Otherwise, great to have FlowSOM in Python as well!

prubbens avatar prubbens

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FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data

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