Hadrien Gourlé

Could you give me the whole traceback for the `object taxon not found`? Not sure if it happens during the json or the csv parsing.

thanks for the traceback. Yes I did run it on openhumans. I'll take a look, but I think it's because one of the json files has unquoted strings (which is...

*wip - will check it out*

I can add a `BUSCO` or a `checkm` step. More marker genes == better assembly

Hi! This is a good idea. Nextflow apparently has a `--with-dag` option that outputs a graph of the processes that are executed. I'll try and add it to the `README.md`...

Both the chr22 fasta file and the sample.txt file are in the `toy_rna.tar.gz` archive. Thank you for your constructive feedback 😊

Hi! Peewee is self-locking on read or write by default. The first read creates a shared lock and the first write creates a reserved lock. When taxadb queries its database...

When/if Busco fixes their downloads, 'cause right now the install procedurewould be very hackish

Hi! Thank you for the bug report. I'll investigate and come back to you.

Do you have the file `mydb.sqlite` on your system, and did it build successfully? I noticed that you were having some problems building the database at #4 /Hadrien