phyloFlash

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phyloFlash.pl: -nozip not functioning

3

I'm using `phyloflash=3.4.2`, and running `phyloFlash.pl -nozip` still results in compressed output. Regardless of `-zip` or `-nozip` (or nothing) is used, the output is always compressed

nick-youngblut

nhmmer failure: Error was 'Inappropriate ioctl for device' and return code '35584'

2

It looks like nhmmer fails on phyloFlash v3.4.2. I am running this command: ``` phyloFlash.pl -lib test_phyloflash -CPUs 32 -everything -read1 ../../data/interleave/JMF-2212-17-0001A.interleave.fastq.gz --interleaved -readlength 150 -clusterid 99 -dbhome /scratch/jmf/internal/Analyses_Jay/JMF_2212_17/results/138.1 ```...

osvatic

Use `https://www.ebi.ac.uk/ena/portal/api` instead of old `ena/data/warehouse` path

kbseah

No SSU rRNA sequences found in trusted contigs by Barrnap

5

Hi, I was trying to assemble some endolithic green algae chloroplast 16S rRNA from a coral metatranscriptome. I have the database for multiple strains and I prepared the database following...

AbigailJTH