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Can't take log of 0 at phyloFlash_plotscript_svg.pl line 876.

Open lsamad opened this issue 7 months ago • 1 comments

Hi, I've been running phyloflash fine for groups of samples. Then I used the same script to run new samples, but it failed after processing the first two samples, giving this error

FATAL: Tool execution failed!. Error was 'Inappropriate ioctl for device' and return code '6400' Check log file x_SBJ.plotscript.out Check error log file &1 Aborting. [18:13:17] Saving log to file phyloFlash_log_on_error

the file x_SBJ.plotscript.out says Can't take log of 0 at phyloFlash_plotscript_svg.pl line 876.

Does this have something to do with being unable to handle zero values for log transformation before plotting the histogram? Can I edit the script to replace zeros with 0.0001 instead to avoid this error? Or is it something else?

lsamad avatar May 13 '25 10:05 lsamad