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Samtools 1.7 error - libcrypto.so.1.0.0

Open fa2k opened this issue 1 year ago • 0 comments

When running on some Debian-based Linux systems, it's not possible to run samtools 1.7.

samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory

Samtools is used by SENSV, so the analysis fails.

One solution is to use samtools 1.9 or newer. Link to bioconda issue with information about this: https://github.com/bioconda/bioconda-recipes/issues/13958

I got around it by overriding to use samtools=1.9 and htslib=1.9 in the step-by-step build (Dockerfile here https://github.com/fa2k/dockerfiles/blob/main/SENSV/Dockerfile)

fa2k avatar May 09 '23 17:05 fa2k