RNAlysis
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Bug Report: Translate gene IDs, FileNotFoundError
Describe the bug
Hey.
I want to translate the ensemble gene names into UniProit names but I get this error:
Traceback (most recent call last): File "rnalysis/gui/gui.py", line 2554, in redo File "rnalysis/gui/gui.py", line 2539, in redo File "rnalysis/gui/gui.py", line 1970, in _apply_function_from_params File "rnalysis/gui/gui.py", line 1356, in _apply_function_from_params File "rnalysis/filtering.py", line 392, in translate_gene_ids File "rnalysis/utils/io.py", line 1039, in map_gene_ids File "rnalysis/utils/io.py", line 1250, in _get_id_abbreviation_dicts FileNotFoundError: [Errno 2] No such file or directory: '/var/folders/6h/vt6qqj_n7s983x66mn0q_d9h0000gn/T/_MEI0jL4t9/rnalysis/utils/../data_files/uniprot_dataset_abbreviation_dict.json'
Here is the shortened file I used for this: head.csv
Is my RNAlysis installation missing data?
Steps To Reproduce
loaded table general translate gene IDs
- translate to UniProtKB AC/ID
- translate from Ensembl
(I also tried other translate to and also auto for translate from. As far as I can see the error message is always the same)
Expected behavior
No response
Screenshots
No response
How did you install RNAlysis?
Stand-alone app
RNAlysis version
3.6.0
Operating system
MacOS 12.7
Additional context
No response