markov_clustering

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Hey there! I'm trying to install this package using `pip install markov_clustering[drawing]` but I keep getting an error message: `no matches found: markov_clustering[drawing]` The standard version is working fine but...

saramasarone

Fix modularity Q computation error object is not iterable

akshaykapoor347

Error when using inflation argument with a value different than pre-defined

1

Hi, When I try to set different inflation values I get this error. My adjacency matrix does not contain NA values but it has negative ones. ``` /Users/gema/opt/anaconda3/lib/python3.8/site-packages/markov_clustering/mcl.py:38: RuntimeWarning: invalid...

gema-sanz

Overlapping clusters

1

I'm getting clusters that have overlapping nodes. My assumption is that clusters should have completely distinct sets of nodes. Is my assumption wrong or is this an error?

xonq

Some nodes belong to more than one clusters.

20

After run_mcl and get_clusters, I found that one node belongs to two clusters. Is this method doing a soft clustering?

hw449

How can i have multiple windows opened with different figures?

ktsakos

I draw a graph with some weights between some edges. Could i show these weights into the plot during the draw of my graph?

ktsakos

conda-forge support

3

Hi I was wondering if we could make this package available via conda? The we can only install onto our servers via conda so I am unable to use this...

Fish-Soup

Hi. This package helped me a lot with my research. Do you have any suggestion on how I could cite this package in my paper?

Karashan

markov_clustering not works with scipy 1.3.0

2

I just copied the README example in a python console: ``` Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] :: Anaconda, Inc. on linux Type "help", "copyright", "credits" or...

ggautreau