Guillaume Gaullier

After some investigation, I found out that in my case the error was caused by a messed up directory structure under `content/tags` and `content/categories`. Moving these md files where Hugo...

> Also not clear if we want to dump these png files vs putting this in the notebook? From a user's point of view: why not both? I like having...

I agree it's a good default behavior to automatically analyze the last iteration. But it would be nice if this could be turned off too. When using a cluster and...

Yes, setting `$CUDA_VISIBLE_DEVICES` before the `cryodrgn` command works perfectly well (at least it did when I used it; I haven't run cryodrgn recently).

@aleksspasic have you tried temporarily copying the particle stack to an SSD (assuming you have one) and running the cryoDRGN training reading particles from there? Optimizing disk access patterns will...

This is all I can think of too. Now another question: since this is becoming an option, what should be the default value? 0, to keep behavior consistent with previous...

Hello! Very sorry it took me so long to get back to this. I have finally tested it, and it works nicely. This is so much easier to read now:...

Re-opening this issue because the numbering is still off in the UMAP and PCA plots found in the `kmeans` directory after running `cryodrgn analyze`. This is apparent in the very...

Hello, Bumping this because [more people have started running into this issue](https://discuss.cryosparc.com/t/cryosparc-cannot-determine-topaz-version/13930/1). I proposed a very simple fix in #178, a single line change to emit a version string in...

This will be a welcome improvement! On several systems, I have run into the "too many command-line arguments" limitation, and there is no other solution than splitting the dataset in...