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Do we have a function to compute RNA velocity for cell by gene matrix?

Open HelloWorldLTY opened this issue 1 year ago • 1 comments

Hi, I wonder if there is any function in celldancer which can generate the raw RNA velocity matrix. I intend to compare this method with other RNA velocity estimation method. Thanks a lot.

HelloWorldLTY avatar Jan 13 '24 22:01 HelloWorldLTY

Hello,

Thank you for reaching out. The to_dynamo function might be helpful for you to transfer the dataframe to data. Then you can extract the velocity matrix from the adata.

Best, Shengyu

Abclisy avatar Mar 15 '24 19:03 Abclisy