cellDancer
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How to select gene list
Hi Doc ex: gene_list=['Smarca2', 'Rbms2', 'Myo1b', 'Hba-x', 'Yipf5', 'Skap1', 'Smim1', 'Nfkb1', 'Sulf2', 'Blvrb', 'Hbb-y', 'Coro2b', 'Yipf5', 'Phc2', 'Mllt3']
loss_df, cellDancer_df=cd.velocity(cell_type_u_s,
gene_list=gene_list,
permutation_ratio=0.125,
n_jobs=8)
I don't know how to selsect gene_list for my analysis, could you give some advises? Thanks
Hello,
Thank you for reaching out. The preprocessing example allows you to obtain the top 2000 genes. You can also specify your top n genes.
For finding genes of interest, this issue might be helpful.
Best, Shengyu