webiste and cdplt.scatter_gene problems
Dear CellDancer team, First, The website of CellDancer (https://guangyuwanglab2021.github.io/cellDancer_website/index.html#) couldn't display completely when I logged on, so I asked the IT staff that there was a problem with the website. Can you solve it?
Second, following the instructions I ran into an error when I want to visual the gene velocity :
gene_list=['GATA1','KLF1','EKLF','CEBPB','ID3','EBF1','RUNX2']
ncols=5
height=math.ceil(len(gene_list)/5)*4
fig = plt.figure(figsize=(20,height))
for i in range(len(gene_list)):
ax = fig.add_subplot(math.ceil(len(gene_list)/ncols), ncols, i+1)
cdplt.scatter_gene(
ax=ax,x='splice',y='unsplice',
cellDancer_df=cellDancer_df,
custom_xlim=None,
custom_ylim=None,
colors=colormap.colormap_erythroid,
alpha=0.5,
s = 5,
velocity=True,
gene=gene_list[i])
ax.set_title(gene_list[i])
ax.axis('off')
plt.show()
And I encountered:
Traceback (most recent call last):
File "
hello, looks like it's displaying in the appropriate format right now. Is it displaying correctly on your side? Thank you!