GregorKoehler

Hi @TSbme , I'm not sure I understand your question correctly here, but it indeed does seem strange that the labels 1 and 2 are flipped here. Can you link...

Hi @TSbme, I hope Fabian answered your questions! I'll close the issue for now, but feel free to reopen if you need further clarification!

Hi @noehsueh , have you already tried following the documentation here: https://github.com/MIC-DKFZ/nnUNet/blob/master/documentation/pretraining_and_finetuning.md Let me know if that clarifies the use of overwrite_plans!

Hi @noehsueh, I'm looking into making pretrained weights available for BraTS 2020 in v2 and will post an update here soon. I'm certain we should be able to provide pretrained...

Hi @noehsueh, please excuse the late update on this issue. I was sadly unable to find pretrained weights in nnUNet v2 for this dataset. I did, however, notice that I...

Hi @icekang , I'm not entirely sure if I remember this correctly, but I think this was connected to segmentations from previous stages: https://github.com/MIC-DKFZ/nnUNet/blob/3808231601265aed98d70de4218fc845e185959d/nnunetv2/training/dataloading/data_loader_3d.py#L35 . Maybe @FabianIsensee can hook in...