GregorKoehler

Closing this issue for now, as it has been stale for a while. You are welcome to re-open if the problem persists!

Hi @lolawang22, Concerning your question(s): 1. When preprocessing, did you change the -c config? Per default, both 2d, 3d_lowres and 3d_fullres should be preprocessed and this shouln't be an issue....

Closing this issue for now, as it has been stale for a while. You are welcome to re-open if the problem persists!

Hi @Chenyang-1024 , sorry for leaving this new question unanswered for so long! However, I'm not entirely sure I understand your last question. Does the documentation on region based training...

Closing this issue as it's stale for a week now. Please feel free to re-open if you're still facing issues!

Hi André @elpequeno, did you happen to `watch -n 0.1 nvidia-smi` during the inference of this (rather large volume)? It indeed seems to be quite memory-intense, given the large number...

Hi @elpequeno, I think your best bet to reduce memory consumption is to divide this large volume into chunks and then predicting those separately with nnUNet before merging. Luckily @Karol-G...

Hi André @elpequeno, just checking in. Could the patchly recommendation help in solving the OOM error?

Hi @HussainAlasmawi, please move your case to its own issue in order to keep issues clean and readable. If there's a connection between issues, you can always add a link...

Due to this issue being stale for a while, I'll close it for now. Feel free to re-open if you still face this issue.