Cann't install chromVAR successfully on Linux

[whui2bioinformatics]

Hi, I have tried some times but not install this successfully yet. Can anyone help me?

first, I create a conda environment: conda create -n r and then activate r to install R and packages: conda install -c conda-forge r-base #R4.1 finally, try to install chromVAR with this command, BiocManager::install("chromVAR") but I got the error information as follows

1: In .inet_warning(msg) :
  installation of package ‘RSQLite’ had non-zero exit status
2: In .inet_warning(msg) :
  installation of package ‘AnnotationDbi’ had non-zero exit status
3: In .inet_warning(msg) :
  installation of package ‘annotate’ had non-zero exit status
4: In .inet_warning(msg) :
  installation of package ‘GO.db’ had non-zero exit status
5: In .inet_warning(msg) :
  installation of package ‘CNEr’ had non-zero exit status
6: In .inet_warning(msg) :
  installation of package ‘TFBSTools’ had non-zero exit status
7: In .inet_warning(msg) :
  installation of package ‘chromVAR’ had non-zero exit status

before using R created by conda, I have tried installation chromVAR so many times by R installed by source code in my linux account, but unfortunately I also got some errors, such as fatal error: gsl/gsl_rng.h: No such file or directory, I guess may be I have lacked some shared file in my R program, so I newly create a new conda env and install R, but I still cann't install this(the error information are above)

[whui2bioinformatics]

Hi, this installation problem has solved. cann't install RSQLite by install.packages("RSQLite"), try to used a low RSQLite version.

require(devtools)
install_version("RSQLite", version = "2.2.5")

and then BiocManager::install("chromVAR")

[candacelei]

Hi, Did you successfully install chromVAR? I got the following error message when I followed your step:

install_version("RSQLite", version = "2.2.5") --- Please select a CRAN mirror for use in this session --- Error in download_version_url(package, version, repos, type) : version '2.2.5' is invalid for package 'RSQLite'

[whui2bioinformatics]

Yes, I installed it successfully. May be you need to debug according to all errors emerged.