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Published 20 hours ago • verified publisher icon GreenleafLab

Monocle3 output directory not being created - Error in pdf(path, width = 6, height = 6, useDingbats = FALSE) :

Open sylestiel opened this issue 3 years ago • 5 comments

Attempting to run the new trajectory html https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Trajectory.html

Ran into following error: Screen Shot 2021-03-08 at 3 14 17 PM Screen Shot 2021-03-08 at 3 19 36 PM

sylestiel avatar Mar 08 '21 21:03 sylestiel

@rcorces @jgranja24

Still waiting on some input to run the new trajectory html. Cannot get past the error encountered in the first step.

sylestiel avatar Mar 12 '21 16:03 sylestiel

Sorry for not replying sooner but this does not appear to be an ArchR problem. Your error is with a non ArchR function (https://www.rdocumentation.org/packages/grDevices/versions/3.6.2/topics/pdf) and the error you are receiving does not look like something related to ArchR.

rcorces avatar Mar 12 '21 16:03 rcorces

any insights on this? I am having the same error

qlan20 avatar Oct 18 '21 06:10 qlan20

For me the problem was fixed by creating the Monocole3 directory in the path myself...

cschmidl avatar May 24 '22 07:05 cschmidl

I was able to fix the problem that way too. Looks like ArchR's wrapper doesn't make the Monocole3 folder.

markphillippebworth avatar Aug 01 '22 20:08 markphillippebworth

This was fixed via https://github.com/GreenleafLab/ArchR/commit/44a0d27840d4e11a6ee04bd9f26f01761b1ff017 on dev and will be incorporated into the next release.

rcorces avatar Nov 09 '22 00:11 rcorces