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plotMarkerHeatmap: nLabel = 0 will result in an error

Open huyulan-funan opened this issue 1 year ago • 1 comments
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I don't want to show the task marker (peak information) on the side when drawing. Please help me. The code and error are as follows:

heatmapPeaks <- plotMarkerHeatmap(

  • seMarker = markersPeaks,
  • cutOff = "Pval <= 0.05 & Log2FC >= 1",
  • plotLog2FC = TRUE,
  • labelMarkers = NULL,
  • nLabel = 0,
  • transpose = FALSE
  • ) ArchR logging to : ArchRLogs/ArchR-plotMarkerHeatmap-66c8f5f5498-Date-2024-10-12_Time-11-51-35.log If there is an issue, please report to github with logFile! Identified 79665 markers! character(0) Preparing Main Heatmap..

2024-10-12 11:51:40 : ERROR Found in .ArchRHeatmap for
LogFile = ArchRLogs/ArchR-plotMarkerHeatmap-66c8f5f5498-Date-2024-10-12_Time-11-51-35.log

<simpleError in class<-(unlist(lapply(x, as.unit), recursive = FALSE), c("unit", "unit_v2")): attempt to set an attribute on NULL>


Error in .logError(e, fn = ".ArchRHeatmap", info = "", errorList = errorList, : Exiting See Error Above

huyulan-funan avatar Oct 12 '24 04:10 huyulan-funan

Hi @huyulan-funan! Thanks for using ArchR! Lately, it has been very challenging for me to keep up with maintenance of this package and all of my other responsibilities as a PI. I have not been responding to issue posts and I have not been pushing updates to the software. We are actively searching to hire a computational biologist to continue to develop and maintain ArchR and related tools. If you know someone who might be a good fit, please let us know! In the meantime, your issue will likely go without a reply. Most issues with ArchR right not relate to compatibility. Try reverting to R 4.1 and Bioconductor 3.15. Newer versions of Seurat and Matrix also are causing issues. Sorry for not being able to provide active support for this package at this time.

rcorces avatar Oct 12 '24 04:10 rcorces