ArchR icon indicating copy to clipboard operation
ArchR copied to clipboard

Error when running addIterativeLSI

Open QianhuiXu opened this issue 6 months ago • 1 comments

Hello,

cellchat is a wonderful tool! I ran into the same issue with running addIterativeLSI with my data.

code: scATAC <- addIterativeLSI( ArchRProj = scATAC, force = TRUE, useMatrix = "TileMatrix", name = "IterativeLSI", iterations = 2, clusterParams = list( #See Seurat::FindClusters resolution = c(0.2), sampleCells = 10000, n.start = 10 ), varFeatures = 25000, dimsToUse = 1:30 )

Error : simpleError in .Call("CRsparse_colSums", x, na.rm, FALSE, sparseResult): "CRsparse_colSums" not resolved from current namespace (Matrix)

I'm really at a loss as to how to proceed, and any guidance would be much appreciated! Thank you for your kind help!

ArchR-addIterativeLSI-7e0451021fc8-Date-2023-12-09_Time-12-50-58.157256.log

QianhuiXu avatar Dec 12 '23 12:12 QianhuiXu