Using this repository for CNV Analysis

[hugokitano]

Hi, I'm an ArchR user that was directed to this repository to perform CNV Analysis since the feature is not yet available in ArchR.

I have a few questions about how this repository works. I see that the work is transferred from step to step via RDS files, so since CNV analysis is the 8th step, I will have to do some number of steps before. Which are necessary?

Another question I have is how to input multiple fragment files. I noticed that a list of vector paths, like in ArchR, doesn't work on the first step, though a single file path does. Is there a way to do this with multiple files?

Thanks!

Hugo Kitano