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f5c or nanopolish

Open JSluo888 opened this issue 1 year ago • 3 comments

Should we use f5c or nanopolish for indexing and eventalign, if our reads are RNA002?

JSluo888 avatar Jul 08 '24 17:07 JSluo888

I guess you can use the nanopolish and the older release of m6anet like v2.0.0

ritianjiang avatar Jul 11 '24 02:07 ritianjiang

I guess you can use the nanopolish and the older release of m6anet like v2.0.0

Do you think the current m6anet version would not support RNA002 reads?

JSluo888 avatar Jul 11 '24 02:07 JSluo888

I guess you can use the nanopolish and the older release of m6anet like v2.0.0

Do you think the current m6anet version would not support RNA002 reads?

No. 😂I ignored that authors have provided both RNA002 model and RNA004 model in 2.1.0

ritianjiang avatar Jul 11 '24 07:07 ritianjiang

Hi @JSluo888,

Either nanopolish or f5c should work.

Thanks!

Best wishes, Yuk Kei

yuukiiwa avatar Aug 26 '24 05:08 yuukiiwa