bambu
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XGBoost model serializaiton message
Minor note, when running bambu I see:
!> se <- bambu(reads = "cell1_sort.bam",
+ annotations = annotation,
+ genome = Hsapiens)
--- Start generating read class files ---
[20:58:14] WARNING: src/learner.cc:553:
If you are loading a serialized model (like pickle in Python, RDS in R) generated by
older XGBoost, please export the model by calling `Booster.save_model` from that version
first, then load it back in current version. See:
https://xgboost.readthedocs.io/en/latest/tutorials/saving_model.html
for more details about differences between saving model and serializing.
...
This is at the beginning of a run.
This is with R 4.3.2 and Bioc 3.18 / bambu (3.4.0)