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Unit test for writeBambuOutput and update bambu output
- In this pull request, I added some unit tests for the writeBambuOutput() function. It tests whether:
- the prefix is as expected
- the output files go to the correct output path
- the file extensions are correct
- the column names for the count outputs include "GENEID" and/or "TXNAME".
- the sample columns for count output files are numeric.
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Additionally, since the theta column was removed from the Bambu output, some of the internal/external data have been updated.
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The objects used for generic testing for quantification have also been updated.