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Unit test for writeBambuOutput and update bambu output

Open lingminhao opened this issue 1 year ago • 0 comments

  1. In this pull request, I added some unit tests for the writeBambuOutput() function. It tests whether:
  • the prefix is as expected
  • the output files go to the correct output path
  • the file extensions are correct
  • the column names for the count outputs include "GENEID" and/or "TXNAME".
  • the sample columns for count output files are numeric.
  1. Additionally, since the theta column was removed from the Bambu output, some of the internal/external data have been updated.

  2. The objects used for generic testing for quantification have also been updated.

lingminhao avatar Aug 15 '22 05:08 lingminhao