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Gadfly plot needs to be scrolled

Open diegozea opened this issue 3 years ago • 16 comments

Hi,

I think this is related to the use of HTML in Pluto that has been recently merged/tagged (Compose 0.9.3): https://github.com/GiovineItalia/Compose.jl/commit/3dbc5a020dbdf300cb0b1c059acbe443676181f1

For some reason, the iframe does not have the correct size in Pluto: Screenshot from 2021-12-21 15-48-17

@fonsp, do you know what could it be the problem here?

The Pluto notebook is:

### A Pluto.jl notebook ###
# v0.17.2

using Markdown
using InteractiveUtils

# ╔═╡ 547697bd-d42e-4246-9f88-628519ad4343
begin
	using RDatasets
	iris = dataset("datasets", "iris")
end

# ╔═╡ 91717478-f5fc-419e-b0e1-009d65e67066
using Gadfly

# ╔═╡ 03429e79-c924-4f63-8d62-d24731861c59
plot(iris, y=:SepalWidth, Geom.boxplot)

# ╔═╡ 00000000-0000-0000-0000-000000000001
PLUTO_PROJECT_TOML_CONTENTS = """
[deps]
Gadfly = "c91e804a-d5a3-530f-b6f0-dfbca275c004"
RDatasets = "ce6b1742-4840-55fa-b093-852dadbb1d8b"

[compat]
Gadfly = "~1.3.4"
RDatasets = "~0.7.6"
"""

# ╔═╡ 00000000-0000-0000-0000-000000000002
PLUTO_MANIFEST_TOML_CONTENTS = """
# This file is machine-generated - editing it directly is not advised

[[AbstractFFTs]]
deps = ["LinearAlgebra"]
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version = "1.0.1"

[[Adapt]]
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uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "3.3.1"

[[ArgTools]]
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[[Artifacts]]
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[[AxisAlgorithms]]
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[[Base64]]
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[[CSV]]
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[[CodecZlib]]
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[[ColorTypes]]
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[[Colors]]
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git-tree-sha1 = "44c37b4636bc54afac5c574d2d02b625349d6582"
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[[CompilerSupportLibraries_jll]]
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[[Compose]]
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[[Contour]]
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[[CoupledFields]]
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[[Crayons]]
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[[DataAPI]]
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[[DataFrames]]
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git-tree-sha1 = "cfdfef912b7f93e4b848e80b9befdf9e331bc05a"
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[[DataStructures]]
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[[DataValueInterfaces]]
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[[Dates]]
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[[DelimitedFiles]]
deps = ["Mmap"]
uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"

[[DensityInterface]]
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version = "0.4.0"

[[Distances]]
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git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04"
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[[Distributed]]
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[[Distributions]]
deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "6a8dc9f82e5ce28279b6e3e2cea9421154f5bd0d"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
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[[DocStringExtensions]]
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[[Downloads]]
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[[ExprTools]]
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[[FFTW]]
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[[FFTW_jll]]
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[[FileIO]]
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[[FillArrays]]
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[[Formatting]]
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[[Future]]
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[[Gadfly]]
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[[Grisu]]
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[[IrrationalConstants]]
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[[LibGit2]]
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[[Libdl]]
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[[LinearAlgebra]]
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[[Loess]]
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[[LogExpFunctions]]
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[[Logging]]
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[[MKL_jll]]
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[[MbedTLS_jll]]
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[[Measures]]
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[[Missings]]
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[[Mmap]]
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[[Mocking]]
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[[MozillaCACerts_jll]]
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[[NetworkOptions]]
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"

[[OffsetArrays]]
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version = "1.10.8"

[[OpenLibm_jll]]
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uuid = "05823500-19ac-5b8b-9628-191a04bc5112"

[[OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.5+0"

[[OrderedCollections]]
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version = "1.4.1"

[[PDMats]]
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uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
version = "0.11.5"

[[Parsers]]
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uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.1.3"

[[Pkg]]
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uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"

[[PooledArrays]]
deps = ["DataAPI", "Future"]
git-tree-sha1 = "db3a23166af8aebf4db5ef87ac5b00d36eb771e2"
uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720"
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# ╔═╡ Cell order:
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# ╠═91717478-f5fc-419e-b0e1-009d65e67066
# ╠═03429e79-c924-4f63-8d62-d24731861c59
# ╟─00000000-0000-0000-0000-000000000001
# ╟─00000000-0000-0000-0000-000000000002

diegozea avatar Dec 21 '21 14:12 diegozea

What is the issue?

fonsp avatar Dec 22 '21 10:12 fonsp

Might be similar to https://github.com/JuliaPlots/Plots.jl/pull/3559

fonsp avatar Dec 22 '21 10:12 fonsp

Hi @fonsp! The problem is the following. Compose 0.9.2 returns an svg tag with two script tags inside the svg to allow for the plot interactivity. The problem is that the interactivity doesn't work in Pluto. So, Compose 0.9.3 wraps the svg tag in html tags fixing the interactivity. But then, Pluto is using iframe, which in turn doesn't expand to the correct plot size. Another thing; I have designed the html fix using Pluto 0.14.7, and I do not see the same problem there. The iframe problem seems to be related to more recent Pluto versions (e.g. 0.17.3).

This is an example with Compose 0.9.2:

image

The code is:

begin
    import Pkg
    Pkg.activate(mktempdir())
    Pkg.add([
        Pkg.PackageSpec(name="Compose", version="0.9.2"),
        Pkg.PackageSpec(name="Gadfly", version="1"),
    ])
    using Compose, Gadfly
end

plot([sin, cos], 0, 2pi)

diegozea avatar Dec 23 '21 23:12 diegozea

related https://discourse.julialang.org/t/gadfly-plots-came-out-really-small-in-pluto-jl/73671 ?

bjarthur avatar Dec 30 '21 03:12 bjarthur

Yes, that's the same issue with the iframe size in recent Pluto versions.

diegozea avatar Dec 30 '21 18:12 diegozea

It seems that the next Pluto version will solve this problem: https://github.com/fonsp/Pluto.jl/issues/1789 :tada: :slightly_smiling_face: The related PR is: https://github.com/fonsp/Pluto.jl/pull/1806

diegozea avatar Jan 05 '22 12:01 diegozea

Nice! But do take a look at https://github.com/JuliaPlots/Plots.jl/pull/3559 : because Gadfly is outputting a full HTML document, instead of an HTML snippet, environments like pluto have to render it inside an iframe instead of directly embedding it in the page. This hurts performance, especially when doing interactivity.

The same patch as https://github.com/JuliaPlots/Plots.jl/pull/3559 should work here

fonsp avatar Jan 05 '22 12:01 fonsp

Ah I see that you made https://github.com/GiovineItalia/Compose.jl/commit/3dbc5a020dbdf300cb0b1c059acbe443676181f1

which is based on https://github.com/fonsp/Pluto.jl/issues/546#issuecomment-705556778

fonsp avatar Jan 05 '22 12:01 fonsp

I tried reverting the change: https://github.com/GiovineItalia/Compose.jl/pull/429 but the scripts still don't work... let's leave it then :)

fonsp avatar Jan 05 '22 12:01 fonsp

I am having this problem too (using most recent versions) which is different from the issue in #1572. In addition to the scroll bars, the non-ASCII letters do not render correctly.

Pluto Notebook Screenshot

image

Pluto Static HTML Export Screenshot

image

nathanrboyer avatar Jun 16 '22 16:06 nathanrboyer

@fonsp @diegozea Any updates on this issue? The above comments say the scrolling issue should be fixed, but it isn't for me. The static HTML export shrinks the plot window and screws up the labels. image

nathanrboyer avatar Jul 07 '22 14:07 nathanrboyer

It is working fine for me (using the last stable version of Gadfly and Pluto).

diegozea avatar Jul 07 '22 20:07 diegozea

Hmm, I am also on the latest versions when getting this error. image image

nathanrboyer avatar Jul 08 '22 14:07 nathanrboyer

Which browser are you using? I'm in Google Chrome (Ubuntu).

diegozea avatar Jul 08 '22 16:07 diegozea

Interesting! I am on Windows 11. The HTML file renders correctly in Firefox, but not in Edge or Chrome.

nathanrboyer avatar Jul 08 '22 17:07 nathanrboyer

Indeed, the problem is still there for static HTML. On MacOS that happens when rendering in Chrome, but renders well in both Firefox and Safari.

josie-athens avatar Jan 10 '24 04:01 josie-athens