David L Gibbs

Hey there!! Good call. I'm already having a better time... so much easier for what I want. It's really come a long ways (in terms of development)! -dave

Hello. It looks like you've found the R code. :-) First of all, if you want to call immune subtypes, I would encourage you to use this: https://github.com/Gibbsdavidl/ImmuneSubtypeClassifier We found...

(1) Maybe. Just depends on the 'new data'. (2) Probably would be. But I don't think read count level data is available for the EB++ TCGA expression set.

Hi there, Thank you for letting me know. You ask "How can it be?" Oh, anything is possible. Is this your own data? Is it something I can download and...

Your english is good. I read your question as “how is that possible?” ... which is fine. They should give *mostly* the same answer. But this project has been very...

I just tried it and got only one difference in cluster label between the notebook and webapp (XY20). One place that can cause differences is in the selection of 'ensemble...

Hi there, Sorry about the delay. I just used the notebook in the repo with no changes... "Call_immune_subtypes_on_new_data.ipynb " -dave On Sun, Apr 28, 2019 at 5:59 PM Tim0thy1 wrote:...

Webapp seems to be working OK today. Thanks for letting us know. -dave On Tue, Apr 23, 2019 at 12:18 AM Tim0thy1 wrote: > @Gibbsdavidl Can you send your code...

Thank you haungwb8. That's right. I would say if you want to see how the signature scores were computed, then the notebook concerned with that might be useful. But if...

Hi @zhongjiehui Please have a look at https://www.cri-iatlas.org/ for a working shiny app with the new tool built in. This version of the subtype caller performs very badly, in general....