Immune-Subtype-Clustering
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Gibbsdavidl
This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
When I run "app.R" in the R 3.6.2 version, the program reported "Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager; see https://bioconductor.org/install". How to solve this...
Recently I'm trying to learn how to use the pipeline in 'How_to_produce_gene_set_scores.ipynb' in this project. I was surprised when I run **ImmuneSigs_function** and get different result from the example, based...
Hi, I detected the immune subtypes using iAtlas Tools and immune subtypes notebook for same data(ebpp_test1_1to20.tsv). But the finalResults are different . How can it be? #####result of notebook###### 1...
Hi, Not really an issue, but more a question. In the walkthrough 'Call_immune_subtypes_on_new_data', is it robust enough to just join 2 independently normalised expression matrices (i.e. the EBPlusPlus and the...
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This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".