GianlucaMattei

Strand Bias ~ 0.96 and low mapping rate

4

Hello, I am using salmon for an RNAseq experiment but I m getting very low mapping rate (0.03%!) and a strong strand bias (0.96). It never happened before and I...

Setting up input for epigenetic modification detection

1

Hello, I would like to run 5hmC and 5mC detection. in this case should I use the _dna_r9.4.1_450bps_modbases_5mc_hac.cfg_ or the _dna_r9.4.1_450bps_modbases_dam-dcm-cpg_hac.cfg_ to detect all the methylated Cs (not only the...

bug in faceswap.py

8

in past days I used this extension without problems, today I am having this issue: Error running process: /media/gm/ext/stable-diffusion-webui/extensions/sd-webui-roop/scripts/faceswap.py Traceback (most recent call last): File "/media/gm/ext/stable-diffusion-webui/modules/scripts.py", line 451, in process...

hdf5 issue

4

Hello, After installing nanopolish 0.14.0, after installing hd5plugin with "pip install hdf5plugin" and after running "export HDF5_PLUGIN_PATH=/usr/local/hdf5/lib/plugin" (I do no have this path btw) I get this error: ``` /data1/Tools/lib/nanopolish/nanopolish...

ImportError: cannot import name 'CascadeForestClassifier' from 'deepforest'

9

Hello, I have installed xTea using conda, I tried both 1.6.0 and 1.9.0 versions but I get always the same error after running the generated script "run_xTEA_pipeline.sh". deepforest version is...