GenomicsStandardsConsortium
Move plant checklist into MIxS as a checklist
Right now is floating around on its own. Needs to be incorporated into the main MIxS file as a checklist and have IDs assigned.
See issue #202.
I know its not time to start discussing v7 yet! but is this plant contextual data consensus a "checklist" or a "package"? It kind of seems like a package that is specific to only MIGS-Eukaryotic checklist, i.e the plant-associated package would be used for MIMS, MIMARKS checklists, but plants package for MIGS. If thats the case it is somewhat unique in out current setup, however, I do think its more appropriate to have a plant specific checklist for Genomes and a plant-associated checklist for MetaGenomes! and we might want to consider something similar for other groups, eg. animals, fungi, birds, mammals, etc....
I'm trying to sort out if rhizosphere soil is plant-associated or soil ... I always assumed soil with some plant -associated extension slots because there's nothing in the plant-associated extension to indicate if the soil or the root was sequenced aside from a slot "plant_structure" but that's optional. With that... what is this plant vs plant_associated???
The URL https://gensc.org/the-plant-specimen-contextual-data-consensus/ doesn't resolve, and it doesn't appear to be in archive.org
This seems to be the consensus reference https://academic.oup.com/gigascience/article/5/1/giw002/2756883?login=false
There is an attachment which is a word doc, I converted it here: https://chat.openai.com/share/c780d6c3-0685-4fd9-8c25-5a1d6bb82b51
