Genevieve Buckley

Automatically check for broken links

5

We need an automated link checker to check for 404 broken links in the documentaion. Ideally it would be run during the CI checks.

TrackObjects error when using 'Measurements' tracking method

8

I've encountered an error when trying to use the 'Measurements' tracking method in the TrackObjects module with CellProfiler3.0.0. Can anyone help with ideas? Error message: > Error while processing TrackObjects:...

Valid meshes do not require len(points) == len(obj:vn)

2

Closes https://github.com/nschloe/meshio/issues/1261 Closes https://github.com/nschloe/meshio/issues/1377 This PR removes a check for point data consistency, since that restriction is not actually fulfilled by many valid mesh files. https://github.com/nschloe/meshio/blob/0138cc8692b806b44b32d344f7961e8370121ff7/src/meshio/_mesh.py#L165-L169 This PR also adds...

DOIs being given to release candidates instead of the actual release

3

Hi! Someone on our team has noticed that Zenodo is giving DOIs to release candidates instead of the actual releases. Here is the list of releases for [napari](https://github.com/napari/napari/), compared with...

Switch to pyproject.toml package setup

6

Closes https://github.com/dask/dask-image/issues/305

Flake8 problems

4

There are two problems: 1. I don't think pytest is running flake8 like it should be, and 2. When you do force flake8 to run with pytest manually, there are...

Fix for string translations CI check

3

# References and relevant issues https://github.com/napari/napari/issues/6395 https://github.com/napari/napari/issues/5585 # Description The [string translations CI check](https://github.com/napari/napari/actions/workflows/test_translations.yml) has been failing for quite some time, as pointed out in issue https://github.com/napari/napari/issues/6395 This PR: *...

numpy version 2.0 compatibility

8

# References and relevant issues * Closes https://github.com/napari/napari/issues/6752 * Reference https://numpy.org/devdocs/numpy_2_0_migration_guide.html#ruff-plugin * Previous related PR https://github.com/napari/napari/pull/2910 # Description This PR: 1. Adds a ruff linting rule to check compatibility with...

Example script mgui_with_threadpoolexec_.py aborts with libc++abi error

7

### 🐛 Bug Report When I try to run the example script `examples/mgui_with_threadpoolexec_.py`, it aborts with the error `libc++abi: terminating due to uncaught exception of type NSException`. Details ``` python...

Example script mgui_dask_delayed_.py - segmentation fault

1

### 🐛 Bug Report When I click "Run" on the napari dock widget from the `examples/mgui_dask_delayed_.py` demo script, python crashes with a segmentation fault. ### 💡 Steps to Reproduce 1....