phenopy

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Calculate gene similarity on the HPO

2

Dear Kevin, I would like to calculate the similarity for a few genes (~2000). I annotated these genes with the HPO codes from the human phenotype ontology webpage (http://compbio.charite.de/jenkins/job/hpo.annotations/lastSuccessfulBuild/artifact/util/annotation/genes_to_phenotype.txt). I...

stefanucci-luca

[](https://renovatebot.com) Welcome to [Renovate](https://togithub.com/renovatebot/renovate)! This is an onboarding PR to help you understand and configure settings before regular Pull Requests begin. 🚦 To activate Renovate, merge this Pull Request....

renovate[bot]

Otherwise you end up with `Pipfile not found! Aborting!`

Jessime

Bumps [wheel](https://github.com/pypa/wheel) from 0.36.2 to 0.38.1. Changelog Sourced from wheel's changelog. Release Notes UNRELEASED Updated vendored packaging to 22.0 0.38.4 (2022-11-09) Fixed PKG-INFO conversion in bdist_wheel mangling UTF-8 header values...

dependabot[bot]

Bumps [certifi](https://github.com/certifi/python-certifi) from 2020.12.5 to 2022.12.7. Commits 9e9e840 2022.12.07 b81bdb2 2022.09.24 939a28f 2022.09.14 aca828a 2022.06.15.2 de0eae1 Only use importlib.resources's new files() / Traversable API on Python ≥3.11 ... b8eb5e9 2022.06.15.1...

dependabot[bot]

https://cran.r-project.org/package=SimReg https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827100/ should we add this as a similarity metric?

Vincent-Ustach

Errors (and solutions) with anaconda on Windows 10

1

Hello, Thank you for the package. Two issues when trying to use this in anaconda on Windows 10: - the pip package is outdated and does not (yet) have the...

data-dude92