LAPIS

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chore(root): bump @commitlint/cli from 19.3.0 to 19.4.0 in the minorandpatch group

1

Bumps the minorandpatch group with 1 update: [@commitlint/cli](https://github.com/conventional-changelog/commitlint/tree/HEAD/@commitlint/cli). Updates `@commitlint/cli` from 19.3.0 to 19.4.0 Release notes Sourced from @​commitlint/cli's releases. v19.4.0 Features Support command line options from a file by...

dependabot[bot]

chore(lapis): bump the minorandpatch group across 1 directory with 4 updates

1

Bumps the minorandpatch group with 3 updates in the /lapis directory: [org.antlr:antlr4](https://github.com/antlr/antlr4), [org.jetbrains.kotlin.jvm](https://github.com/JetBrains/kotlin) and [org.jetbrains.kotlin.plugin.spring](https://github.com/JetBrains/kotlin). Updates `org.antlr:antlr4` from 4.13.1 to 4.13.2 Release notes Sourced from org.antlr:antlr4's releases. 4.13.2 Minor updates...

dependabot[bot]

chore(lapis-e2e): bump the minorandpatch group across 1 directory with 4 updates

1

Bumps the minorandpatch group with 4 updates in the /lapis-e2e directory: [@types/chai](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/chai), [@types/node](https://github.com/DefinitelyTyped/DefinitelyTyped/tree/HEAD/types/node), [mocha](https://github.com/mochajs/mocha) and [tsx](https://github.com/privatenumber/tsx). Updates `@types/chai` from 4.3.16 to 4.3.17 Commits See full diff in compare view Updates...

dependabot[bot]

[DO NOT MERGE] feature branch regex

2

resolves #750 This feature branch maps string fields from the API to SILO's StringSearch instead of StringEquals expressions This is a breaking change as any search for a string field...

Taepper

chore(github-actions): bump gradle/actions from 3 to 4

1

Bumps [gradle/actions](https://github.com/gradle/actions) from 3 to 4. Release notes Sourced from gradle/actions's releases. v4.0.0-rc.1 First release candidate for v4 of the setup-gradle, dependency-submission and wrapper-validation actions provided under gradle/actions. This is...

dependabot[bot]

Before announcing an official release, we should polish the README: * provide a catchy summary that explains in very few sentences what SILO does. * provide an overview over the...

fengelniederhammer

document `defaultNucleotideSequence` and `defaultAminoAcidSequence` in database config.

fengelniederhammer

FASTA descriptions

4

(Assuming that it doesn't) it would be nice if LAPIS could support returning FASTAs with "descriptions", e.g. https://www.ncbi.nlm.nih.gov/nuccore/NC_045512.2?report=fasta has both an accession and then a description, separated by a space....

theosanderson

Healthcheck

6

Related and complementary to #812, we should have a `HEALTHCHECK` in Docker to ensure that Docker detects when LAPIS is non-responsive. (Thanks to @theosanderson for suggesting this.)

chaoran-chen

We currently use version 6.4.0. Check if we can upgrade to version 7.6 or higher.

JonasKellerer