Gal Kepler

Session biases

3

I've encountered some troubling issues when working with a longitudinal dataset... This dataset includes two sessions per participant, each including a DWI series (and another B0 series with an opposite...

Processing HCP-like dataset

5

Hii all, I'm trying to process an HCP-like dataset and would appreciate any tips regarding any specific flags that may be appropriate. My DWI acquisition consists of 2 PE images...

[SUGGESTION] - Adding relevant reference to brain annotations.

3

### Description of issue Hello everyone, I have a suggestion regarding brain annotations. It would be helpful if a relevant reference could be included when retrieving an annotation. This will...

### Summary It should be beneficial to have an interface for MRTrix's [`tcksift2`](https://mrtrix.readthedocs.io/en/dev/reference/commands/tcksift2.html) as part of the overall effort to include as many as possible of the tools being used...

### Summary It should be beneficial to have an interface for MRTrix's [`tcksift`](https://mrtrix.readthedocs.io/en/dev/reference/commands/tcksift.html) as part of the overall effort to include as many as possible of the tools being used...

Changed inheritence of TensorMetricsInputSpec

1

## Summary Simply changed the inheritance to the correct one (`TensorMetricsInputSpec` instead of `CommandLineInputSpec` Fixes #3662.

### Summary The TensorMetricsInputSpec doesn't inherit from MRTrix3BaseInputSpec, making some of the basic inputs unavailable for this class. ### Actual behavior The specifications inherit from the CommandLineInputSpec. ### Expected behavior...

[ENH] Added available inputs for MRTrix3's 5ttgen

2

## Summary Just a small addition of inputs to match those available through the [original implementation of MRTrix3](https://mrtrix.readthedocs.io/en/dev/reference/commands/5ttgen.html). Fixes #3657. ## List of changes proposed in this PR (pull-request) Just...

### Summary Current implementation lacks some inputs that are available through the original command ([MRTrix3's `5ttgen`](https://mrtrix.readthedocs.io/en/dev/reference/commands/5ttgen.html)) ### Actual behavior Currently only `in_file`, `algorithm` and `out_file` are available as inputs. ###...