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verified publisher icon Gaius-Augustus

docker Error

Open jailynai opened this issue 4 years ago • 1 comments

I run the processing in Braker2 Docker in mac but I always found the problem：

Sat Jul 24 13:35:34 2021: Log information is stored in file /usr/Downloads/01-augustus/braker/braker.log

ERROR in file /usr/local/bin/braker.pl at line 6656 Failed to execute: perl /usr/Downloads/gmes_linux_64/gmes_petap.pl --verbose --sequence=/usr/Downloads/01-augustus/braker/genome.fa --ET=/usr/Downloads/01-augustus/braker/genemark_hintsfile.gff --cores=12 --gc_donor 0.001 1>/usr/Downloads/01-augustus/braker/GeneMark-ET.stdout 2>/usr/Downloads/01-augustus/braker/errors/GeneMark-ET.stderr Failed to execute: perl /usr/Downloads/gmes_linux_64/gmes_petap.pl --verbose --sequence=/usr/Downloads/01-augustus/braker/genome.fa --ET=/usr/Downloads/01-augustus/braker/genemark_hintsfile.gff --cores=12 --gc_donor 0.001 1>/usr/Downloads/01-augustus/braker/GeneMark-ET.stdout 2>/usr/Downloads/01-augustus/braker/errors/GeneMark-ET.stderr

how can i fix them thanks

jailynai avatar Jul 25 '21 12:07 jailynai

What is the content of the log files?

  • /usr/Downloads/01-augustus/braker/errors/GeneMark-ET.stderr
  • /usr/Downloads/01-augustus/braker/GeneMark-ET.stdout

tomasbruna avatar Aug 27 '21 18:08 tomasbruna