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Published 20 hours ago • verified publisher icon Gaius-Augustus

Changing genetic code table

Open KatharinaHoff opened this issue 5 years ago • 3 comments

It is currently not possible to switch genetic code table for running BRAKER. AUGUSTUS can use a different genetic code, but GeneMark-ES/ET must be extended before BRAKER can be extended.

BRAKER code extension is planned, depending on GeneMark-ES/ET extension.

Required changes:

  • command line option for genetic code table in BRAKER

  • translation script prior aa2nonred.pl (part of AUGUSTUS)

  • editing AUGUSTUS parameters prior training and prediction

  • command line option for getAnnoFastaFromJoingenes.pl in BRAKER

KatharinaHoff avatar Sep 12 '18 09:09 KatharinaHoff