FeatureCollection::esource: invalid source key: E

[dtzhu337]

Hi,

I tried to run Augustus, but got this notification FeatureCollection::esource: invalid source key: E

./bin/augustus: ERROR FeatureCollection::esource: invalid source key: E

The script I used is ./bin/augustus --genemodel=partial --protein=on --introns=on --hintsfile=hints1.gff --species=bombus_impatiens1 *.contigs.fasta > augout0305.txt

It was interesting that when I delete --hintsfile parameter, Augustus can run. But I want to include the intron hints. How can I do with this? Thank you

[KatharinaHoff]

You should provide a suitable extrinsic.cfg file. In your case, it must include the source key E. You find examples in Augustus/config/extrinsic

On Tue 5. Mar 2019 at 23:10, dtzhu337 [email protected] wrote:

Hi,

I tried to run Augustus, but got this notification FeatureCollection::esource: invalid source key: E

./bin/augustus: ERROR FeatureCollection::esource: invalid source key: E

The script I used is ./bin/augustus --genemodel=partial --protein=on --introns=on --hintsfile=hints1.gff --species=bombus_impatiens1 *.contigs.fasta > augout0305.txt

It was interesting that when I delete --hintsfile parameter, Augustus can run. But I want to include the intron hints. How can I do with this? Thank you

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[dtzhu337]

Hi Katharina,

Thank you so much for your reply. I also thought this was the problem, but just to make sure. It works so far.

Best wishes

On Wed, Mar 6, 2019 at 1:15 AM Katharina Hoff [email protected] wrote:

You should provide a suitable extrinsic.cfg file. In your case, it must include the source key E. You find examples in Augustus/config/extrinsic

On Tue 5. Mar 2019 at 23:10, dtzhu337 [email protected] wrote:

Hi,

I tried to run Augustus, but got this notification FeatureCollection::esource: invalid source key: E

./bin/augustus: ERROR FeatureCollection::esource: invalid source key: E

The script I used is ./bin/augustus --genemodel=partial --protein=on --introns=on --hintsfile=hints1.gff --species=bombus_impatiens1 *.contigs.fasta > augout0305.txt

It was interesting that when I delete --hintsfile parameter, Augustus can run. But I want to include the intron hints. How can I do with this? Thank you

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Gaius-Augustus/Augustus/issues/46, or mute the thread < https://github.com/notifications/unsubscribe-auth/AlgvJO6hXLBS1Xj8imvCVLk_nB6gO6-2ks5vTutYgaJpZM4bfmzl

.

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