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Protocol to configure AUGUSTUS to predict genes in genomes with different isochore regions?

Open SchwarzEM opened this issue 1 year ago • 1 comments

One of the issues I may be facing in running AUGUSTUS on a new genome is the possibility that it has substantial variations in GC% content in different parts of the genome. As has been noted elsewhere, this can cause problems in trying to get accurate gene predictions with AUGUSTUS (which typically generates just one parameter set for an entire genome).

One of your pages of documentation for how to configure and run AUGUSTUS (http://bioinf.uni-greifswald.de/bioinf/wiki/pmwiki.php?n=Augustus.Augustus) has the interesting link title, "Configure AUGUSTUS to predict genes in genomes with different isochore regions". However, when I click on the relevant URL:

http://bioinf.uni-greifswald.de/bioinf/wiki/pmwiki.php?n=Augustus.Isochores

I find myself looking at a blank page that requires a password login!

Is there some way to get access to actual, readable documentation for protocols that may help configure AUGUSTUS so that it deals with varying isochore regions in a genome?

Thank you for any information that you have.

SchwarzEM avatar Jan 15 '23 19:01 SchwarzEM