Augustus
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Gaius-Augustus
augustus: symbol lookup error: /home/yue/anaconda3/envs/funannotate/bin/../lib/libgsl.so.25: undefined symbol: cblas_ctrmv
Hi The following problems occurred when I used Augustus.
when I installed it with conda:
conda install augustus=3.3.3
augustus --species=help
The following error occurs：(The version of gsl is 2.6)
augustus: symbol lookup error: /home/yue/anaconda3/envs/funannotate/bin/../lib/libgsl.so.25: undefined symbol: cblas_ctrmv
when I installed it with conda:
conda install augustus=3.4
augustus --species=help
The following error occurs：(The version of gsl is 2.7.1)
augustus: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory
The gsl=2.7.1 doesn't have a libgsl.so.25 at all, but libgsl.so.27.
I want to use Augustus=3.3.3, how can I solve the above problems？
You need to install the missing library. I generally recommend to install Augustus and dependencies outside of conda, directly from github.
Midreancgle @.***> schrieb am Sa. 18. Juni 2022 um 10:24:
Hi The following problems occurred when I used Augustus.
when I installed it with conda:
conda install augustus=3.3.3
augustus --species=help
The following error occurs：(The version of gsl is 2.6)
augustus: symbol lookup error: /home/yue/anaconda3/envs/funannotate/bin/../lib/libgsl.so.25: undefined symbol: cblas_ctrmv
when I installed it with conda:
conda install augustus=3.4
augustus --species=help
The following error occurs：(The version of gsl is 2.7.1)
augustus: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory
The gsl=2.7.1 doesn't have a libgsl.so.25 at all, but libgsl.so.27.
I want to use Augustus=3.3.3, how can I solve the above problems？
— Reply to this email directly, view it on GitHub https://github.com/Gaius-Augustus/Augustus/issues/344, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJMC6JEFZAYTQZERJB4KYXLVPWBVJANCNFSM5ZEM6WRA . You are receiving this because you are subscribed to this thread.Message ID: @.***>
How to quickly test whether Augustus is installed successfully and can run normally?
How to quickly test whether Augustus is installed successfully and can run normally?
Hi! I also met this problem. Did you resolve it?
conda install -c conda-forge gsl can fix this error : error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory
