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Masking of lowercase characters before gene prediction
Hello,
This is not an issue but rather a question. I am using Augustus v2.7. After reading the manual I gave Augustus a repeat softmasked file, expecting the command to work. However, The following command throws an error.
Partial Command:
augustus.2.7/bin/augustus --species=arabidopsis --strand=both --genemodel=complete --progress=true --softmasking=on --gff3=on --uniqueGeneId=true --sample=0 --chunksize 5000000 --overlap 10000
augustus.2.7/bin/augustus: ERROR Unknown parameter: "softmasking". Type "augustus" for help.
Does version 2.7 support the softmasking option? Or am I not using the same correctly.
Thanks Abhijit