UTR training

[francicco]

Hi,

I'm trying to train Augustus for UTRs. I got this as a final result. It looks like the UTR failed.

*******      Evaluation of gene prediction     *******

---------------------------------------------\
                 | sensitivity | specificity |
---------------------------------------------|
nucleotide level |       0.938 |        0.56 |
---------------------------------------------/

----------------------------------------------------------------------------------------------------------\
           |  #pred |  #anno |      |    FP = false pos. |    FN = false neg. |             |             |
           | total/ | total/ |   TP |--------------------|--------------------| sensitivity | specificity |
           | unique | unique |      | part | ovlp | wrng | part | ovlp | wrng |             |             |
----------------------------------------------------------------------------------------------------------|
           |        |        |      |                409 |                158 |             |             |
exon level |   1028 |    777 |  619 | ------------------ | ------------------ |       0.797 |       0.602 |
           |   1028 |    777 |      |   62 |    3 |  344 |   62 |    4 |   92 |             |             |
----------------------------------------------------------------------------------------------------------/

----------------------------------------------------------------------------\
transcript | #pred | #anno |   TP |   FP |   FN | sensitivity | specificity |
----------------------------------------------------------------------------|
gene level |   218 |   100 |   26 |  192 |   74 |        0.26 |       0.119 |
----------------------------------------------------------------------------/

------------------------------------------------------------------------\
            UTR | total pred | CDS bnd. corr. |   meanDiff | medianDiff |
------------------------------------------------------------------------|
            TSS |         16 |              0 |         -1 |         -1 |
            TTS |         10 |              0 |         -1 |         -1 |
------------------------------------------------------------------------|
            UTR | uniq. pred |    unique anno |      sens. |      spec. |
------------------------------------------------------------------------|
                |  true positive = 1 bound. exact, 1 bound. <= 20bp off |
 UTR exon level |          0 |              0 |       -nan |       -nan |
------------------------------------------------------------------------|
 UTR base level |          0 |              0 |       -nan |       -nan |
------------------------------------------------------------------------/
nucUTP= 0 nucUFP=0 nucUFPinside= 0 nucUFN=0
# total time: 154
# command line:
# augustus --species=Eueides_isabella bothutr.gb.test

Thanks for your help Francesco