Error in fix_in_frame_stop_codon_genes.py

[emmannaemeka]

Hi @KatharinaHoff

While running the script I encountered this error

Error in file /mnt/bin/augustus/augustus-3.3.3/scripts/fix_in_frame_stop_codon_genes.py at line 267: Return code of subprocess was 255['/bin/perl', '/mnt/bin/augustus/augustus-3.3.3/scripts/gtf2gff.pl', '--out=corrected_07092020.gff3', '--printExon', '--gff3']

[KatharinaHoff]

Can you provide a small toy dataset to reproduce the error? Thanks in advance. Katharina

On Tue, Sep 8, 2020 at 5:59 AM emmannaemeka [email protected] wrote:

Hi @KatharinaHoff https://github.com/KatharinaHoff

While running the script I encountered this error

Error in file /mnt/bin/augustus/augustus-3.3.3/scripts/fix_in_frame_stop_codon_genes.py at line 267: Return code of subprocess was 255['/bin/perl', '/mnt/bin/augustus/augustus-3.3.3/scripts/gtf2gff.pl', '--out=corrected_07092020.gff3', '--printExon', '--gff3']

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[XK4959]

类似的错误

Creating directory tmp_jkulsosc/. Error in file /users/gaoxl/soft/miniconda3/bin/fix_in_frame_stop_codon_genes.py at line 225: /users/gaoxl/soft/Augustus-3.3.1-tag1/scripts/gtf2gff.pl is not executable!