Gabriel Al-Ghalith

Ack, I didn't realize the story behind bsdtar. :-) Your suggested solution sounds extremely reasonable and should solve the problem nicely. On Sat, Oct 8, 2022, 3:55 PM Tim Kientzle...

Hi Laven, Yes, the procedure should be the the same. The taxonomy file simply needs to be in the same format as the GreenGenes taxonomy file (listing the accession followed...

Hi! Thanks for using NINJA-OPS! Because NINJA-OPS uses a standard closed-reference database by default, in this case Greengenes 13_8, the Greengenes reference tree should be used for phylogenetic analysis. Since...

Sure, here's the tree! 👍 [97_otus.zip](https://github.com/GabeAl/NINJA-OPS/files/1283212/97_otus.zip) Yes, that's one reasonable way to do closed ref. If there are too many failures, I'd lower the id to 95% or so (the...

I would strongly recommend using the original Windows version of NINJA-OPS and the original Windows version of bowtie2 and python instead of using the Bash environment. ;) This is because...

Any failure of ninja_filter for any reason will trigger that generic error. NINJA-OPS does not support Windows 10's BASH environment currently. Nor do many bioinformatics tools (try running usearch, uclust,...

@ZeweiSong Update on this! After upgrading my version of Windows 10 to the latest version (Creator's Update, use this: https://go.microsoft.com/fwlink/?linkid=846364) and then updating my BASH Ubuntu environment on Windows to...

Good point. I've moved all databases except the default to my site last release for this reason... Maybe it will help at least going forward. On May 13, 2016 12:45...

Hi, thanks for reporting! A couple of quick questions for you, if that's okay: 1. What version of NINJA are you using? Currently only v1.5.1 and later are supported, so...