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Problem on performance

Open Hai1983 opened this issue 2 years ago • 0 comments

Hi I am use redundans with :

"module load Python/2.7.16-GCCcore-8.3.0 /home/ulg/bbasv/daomhai/software/redundans/./redundans.py -v -i 350-R1.paired.fastq.gz 350-R2.paired.fastq.gz -f Catfish.asm.bp.p_ctg.fa -o Result"

And it not work with the confirm ;

" Options: Namespace(fasta='Catfish.asm.bp.p_ctg.fa', fastq=['350-R1.paired.fastq.gz', '350-R2.paired.fastq.gz'], identity=0.51, iters=2, joins=5, limit=0.2, linkratio=0.7, log=<open file '', mode 'w' at 0x14e4b1dca1e0>, longreads=[], mapq=10, mem=16, minLength=200, nocleaning=True, nogapclosing=True, norearrangements=False, noreduction=True, noscaffolding=True, outdir='Result', overlap=0.8, reference='', resume=False, threads=4, tmp='/tmp', usebwa=False, verbose=True) Directory Result exists!"

May help to explain what is my problem ?? Thanks in advances! Hai

Hai1983 avatar Nov 24 '21 22:11 Hai1983