redundans
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RuntimeError: maximum recursion depth exceeded
Was running redundans with contigs from a platanus-allee assembly, a reference genome of the same species, and some pacbio long reads. I am getting this error: error log
command used
./redundans.py \
-f /home/jon/Working_Files/japonicus_genome_project/platanus-allee/Platanus_allee_v2.2.2_Linux_x86_64/ajap_step10_contig.fa \
-l /home/jon/Working_Files/sea_cuke_species_data/apostichopus_japonicus/apostichopus_japonicus_raw_genome_seq_data/SRR6282347.fasta \
-t 70 \
--reference /home/jon/Working_Files/genome_assemblies/japonicus/Ajap_genome.fasta \
--log ajap-ajap_redun_plat-allee.txt \
-o ajap-ajap_redun_plat-allee
Thoughts?